YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|2980780, gi\|2...
Protein type:	Transmembrane
Type Confidence:	0.54
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNDEEPSNRT KRGMLDLGNM SMSASVALTC CPSFLPAASG PELAKSINSP ENLAGECNGK  60
   61 HLPMIPPEEE VKDIKIANGV TAFTRKQNPS DRVKKGFVLD DHVKDWVKRR VASGVSESTC 120
  121 FLPFLVGAKK MVDCLVCHKP VYPGEDLSCS VRGCQGAYHS LCAKESLGFS KSSKFKCPQH 180
  181 FLIEWSMQEC FVCKQRTQWR CVKCPMAAHD KHSPWSKEIL HLKDQPGRAV CWRHPTDWRL 240
  241 DTKVDFLVYR FHKILLEASY DLYFHRVLLT GLTKSLLIEQ HAVAQSEIEG CSCPESCGNR 300
  301 PFRKEKKIKI VKTEHCGWGV EAAESINKED FIVEYIGEVI SDAQCEQRLW DMKHKGMKDF 360
  361 YMCEIQKDFT IDATFKGNAS RFLNHSCNPN CVLEKWQVEG ETRVGVFAAR QIEAGEPLTY 420
  421 DYRFVQFGPE VKCNCGSENC QGYLGTKRKE PNCLVVSWGA KRRRLFHRPI ARKPQQD

Type	Start	End	Confidence
Cytoplasmic	1	16	0.52
Transmembrane Helix	17	38	0.50
Non-Cytoplasmic	39	477	0.99