YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|6735307, gi\|1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASQISQLAC FSSTNRQFHF QSRSFPCPMI RPQSFVVKSV DGNSSETPAS LSYTAEVSKP  60
   61 VVEKTSKPYS TVDETATNKE SITEPVEEDV ATQPIRAAKI HDFCFGIPYG GLVVSGGLLG 120
  121 FAFSRNLTSL STGVLYGGGL LALSTLSLKI WREGKSSFPY ILGQAAFVLT HFSKPEIAVL 180
  181 SAVVFWKNFT AYSMTKKLFP AGVFAVISAC MLCFYSYVVL SGGNPPPKKL KPSATSPSY

Type	Start	End	Confidence
Cytoplasmic	1	102	0.98
Transmembrane Helix	103	123	0.93
Non-Cytoplasmic	124	129	0.79
Transmembrane Helix	130	151	0.87
Cytoplasmic	152	159	0.87
Transmembrane Helix	160	185	0.56
Non-Cytoplasmic	186	197	0.64
Transmembrane Helix	198	221	0.88
Cytoplasmic	222	239	0.70