YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YMG12_ARATH
Protein type:	Transmembrane
Type Confidence:	0.62
Topology Confidence:	0.20
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASFTTNSLA LRASILANPR LPPPIIRPRL SLPRKLSFNL SLHNARTIVS SAVTSSSPVL  60
   61 SSKPPSQFPF SDSTRSITTL VLLAGVVIKS LIQKLSVAIV NLSPQIQASF RTASPLFFAS 120
  121 LRDRPAGYLN TPLTVVAAGL SKWLDIYSGV LMVRVLLSWF PNIPWDRQPL SAIRDLCDPY 180
  181 LNLFRNIIPP VFDTLDVSPL LAFAVLGTLG SILNNSRG

Type	Start	End	Confidence
Cytoplasmic	1	76	0.46
Transmembrane Helix	77	92	0.20
Non-Cytoplasmic	93	196	0.64
Transmembrane Helix	197	213	0.55
Cytoplasmic	214	218	0.41