YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|25406184, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	19	0.99
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	202	0.99
Transmembrane Helix	203	223	0.95
Cytoplasmic	224	232	0.87
Transmembrane Helix	233	255	0.90
Non-Cytoplasmic	256	262	0.90
Transmembrane Helix	263	285	0.78
Cytoplasmic	286	301	0.72
Transmembrane Helix	302	321	0.86
Non-Cytoplasmic	322	341	0.84
Transmembrane Helix	342	360	0.96
Cytoplasmic	361	380	0.87
Transmembrane Helix	381	402	0.87
Non-Cytoplasmic	403	421	0.83
Transmembrane Helix	422	442	0.94
Cytoplasmic	443	509	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLHLLLLLC LSSSLKVQAS VHEYRSERFV SKGNAFVFHG GSEGIYSSSP SDNFTSDSDS  60
   61 VSFIRFEKIK FQRPEEVSNR SSLSIHAVVF EVEDRENIGG SAYGGQRAVC CTSDLAKLGV 120
  121 CSHGDVIYRP SAKDSGWPQV FGVSLAENEF SVILPTRSIQ VTRTGMYNLY FIHCDSDLKD 180
  181 LVVEGKTIWK NPTGYLPGRM APLMYFYGFM SLAFVLLGIF WFSQCARFWR EVLPLQNCLT 240
  241 LVITLGMCEM ALWYFDYAEF NETGIRPTVI TIWAVTFGSI KRTSARIIIL MVSMGYGVVR 300
  301 PTLGGFTSKV IMLGVTFFIA SEILELMENV GAVSDLSGKA RLFFVLPVAI LDAFFIIWIF 360
  361 KSLSATFKKL QTRRLLVKLD IYRKFTNALA VDILVSLGWI CYELYFKSKD VYNEHWQNAW 420
  421 IIPAFWQLLS FSLLIVICSL WAPSQNSTRY AFSGSSGDTS AEFEKDDYTL TLIKPSPIPS 480
  481 HEVKNLSETR LLPADEGEPE KDLEEDKRE