YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|7485669, gi\|7...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDTTIIYSGF SKLGFLSKDE YNQKVENLEM VFSSVAVQIA RYIVTMTSTG AILLIGFQLS  60
   61 VYVFVMKGGD SSMNSLVWYS WLGGIIIGTM TGANMVLEDH YRAGPRNVVI TGRGLGKALA 120
  121 REFLLSGDRV IVTSRSSESV DMTVKELEQN LKEIMSNASE SARKKLSDAK VVGIACDVCK 180
  181 PEDVEKLSNF AVKELGSINI WVKKHISFCT INNAGTNKGF RPLLEFTEED ITQIVSTNLI 240
  241 GSILCTRGAM DVMSRQHSGG HIFNMDGAGS GGSSTPLTAV YGSTKCGLRQ FHGSIVKESQ 300
  301 KTNVGLHTAS PGMVLTELLL SGSSIKNKQM FNIICELPET VARTLVPRMR VVKGSGKAVN 360
  361 YLTPPRILLA IVTSWLRRGR WFDDQGRALY AAEADRLRNW AENRTRLSLT DAMEMYTENT 420
  421 WVSVFSLSVV CAFIILQSTT PSSFPGT

Type	Start	End	Confidence
Cytoplasmic	1	41	0.95
Transmembrane Helix	42	62	0.91
Non-Cytoplasmic	63	76	0.81
Transmembrane Helix	77	97	0.95
Cytoplasmic	98	419	0.96
Transmembrane Helix	420	440	0.84
Non-Cytoplasmic	441	447	0.82