YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	WHY1_ARATH
Protein type:	Globular with Signal Peptide
Type Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQLLSTPLM AVNSNPRFLS SSSVLVTGGF AVKRHGFALK PTTKTVKLFS VKSRQTDYFE  60
   61 KQRFGDSSSS PSPAEGLPAR FYVGHSIYKG KAALTVDPRA PEFVALDSGA FKLSKDGFLL 120
  121 LQFAPSAGVR QYDWSKKQVF SLSVTEIGTL VSLGPRESCE FFHDPFKGKS DEGKVRKVLK 180
  181 VEPLPDGSGH FFNLSVQNKL VNVDESIYIP ITRAEFAVLI SAFNFVLPYL IGWHAFANSI 240
  241 KPEETSRVNN ASPNYGGDYE WNR

Type	Start	End	Confidence
Signal Peptide	1	31	0.67
N-region	1	22
H-region	23	28
C-region	29	31
Cleavage Site	31	32
Non-Cytoplasmic	32	263	0.81