YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NAC60_ARATH
Protein type:	Transmembrane
Type Confidence:	0.89
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAAPPIEPA VTTTFPGFKF SPTDIELISY YLKRKMDGLE RSVEIIPEVE IYNFEPWDLP  60
   61 DKSIVKSDSE WFFFCARGKK YPHGSQNRRA TKIGYWKATG KERNVKSGSE VIGTKRTLVF 120
  121 HIGRAPKGGR TEWLMHEYCM IGVSLDALVI CRLRRNTEFQ GSTIQKPPQP SLPLDKHVNL 180
  181 RNEAISESIY GWETMVDFYL SSESGQELLS EIAESSQSSQ NPQVPSEEDF YADILRDEIV 240
  241 KLDDPAVSGN TLINVPRLQT ESNTTRVLPL PDMVDKQMQS LLQKLPLQND TGEENNISMS 300
  301 NCFIGIYSIK SINRARWDVV VWLLVMIAVL VFYLV

Type	Start	End	Confidence
Cytoplasmic	1	314	0.74
Transmembrane Helix	315	334	0.82
Non-Cytoplasmic	335	335	0.86