YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GT644_ARATH
Protein type:	Transmembrane
Type Confidence:	0.94
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGGGEVSKEM GACSLAYRRG DQKLRKFVTA RSTKFLLFCC IAFVLVTIVC RSSRPWVNSS  60
   61 IAVADRISGS RKGYTLLMNT WKRYDLLKKS VSHYASCSRL DSIHIVWSEP NPPSESLKEY 120
  121 LHNVLKKKTR DGHEVELRFD INKEDSLNNR FKEIKDLKTD AVFSIDDDII FPCHTVDFAF 180
  181 NVWESAPDTM VGFVPRVHWP EKSNDKANYY TYSGWWSVWW SGTYSMVLSK AAFFHKKYLS 240
  241 LYTNSMPASI REFTTKNRNC EDIAMSFLIA NATNAPAIWV KGKIYEIGST GISSIGGHTE 300
  301 KRTHCVNRFV AEFGKMPLVY TSMKAVDSRN LWFW

Type	Start	End	Confidence
Cytoplasmic	1	31	0.88
Transmembrane Helix	32	50	0.88
Non-Cytoplasmic	51	334	0.97