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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: PDAT2_ARATH
Protein type: Transmembrane
Type Confidence: 0.96
Topology Confidence: 0.83
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSPLLRFRKL SSFSEDTINP KPKQSATVEK PKRRRSGRCS CVDSCCWLIG YLCTAWWLLL  60
   61 FLYHSVPVPA MLQAPESPGT RLSRDGVKAF HPVILVPGIV TGGLELWEGR PCAEGLFRKR 120
  121 LWGASFSEIL RRPLCWLEHL SLDSETGLDP SGIRVRAVPG LVAADYFAPC YFAWAVLIEN 180
  181 LAKIGYEGKN LHMASYDWRL SFHNTEVRDQ SLSRLKSKIE LMYATNGFKK VVVVPHSMGA 240
  241 IYFLHFLKWV ETPLPDGGGG GGPGWCAKHI KSVVNIGPAF LGVPKAVSNL LSAEGKDIAY 300
  301 ARSLAPGLLD SELLKLQTLE HLMRMSHSWD SIVSLLPKGG EAIWGDLDSH AEEGLNCIYS 360
  361 KRKSSQLSLS NLHKQNYSLK PVSRVKEPAK YGRIVSFGKR ASELPSSQLS TLNVKELSRV 420
  421 DGNSNDSTSC GEFWSEYNEM SRESIVKVAE NTAYTATTVL DLLRFIAPKM MRRAEAHFSH 480
  481 GIADDLDDPK YGHYKYWSNP LETKLPEAPE MEMYCLYGVG IPTERSYIYK LATSSGKCKS 540
  541 SIPFRIDGSL DGDDVCLKGG TRFADGDESV PVISAGFMCA KGWRGKTRFN PSGMDTFLRE 600
  601 YKHKPPGSLL ESRGTESGAH VDIMGNVGLI EDVLRIAAGA SGQEIGGDRI YSDVMRMSER 660
  661 ISIKL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle