YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|7321059, gi\|7...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	27	0.97
Transmembrane Helix	28	49	0.94
Non-Cytoplasmic	50	61	0.85
Transmembrane Helix	62	84	0.87
Cytoplasmic	85	96	0.74
Transmembrane Helix	97	115	0.89
Non-Cytoplasmic	116	122	0.58
Transmembrane Helix	123	141	0.82
Cytoplasmic	142	149	0.63
Transmembrane Helix	150	170	0.92
Non-Cytoplasmic	171	182	0.82
Transmembrane Helix	183	206	0.89
Cytoplasmic	207	224	0.80
Transmembrane Helix	225	245	0.91
Non-Cytoplasmic	246	261	0.74
Transmembrane Helix	262	287	0.80
Cytoplasmic	288	291	0.55
Transmembrane Helix	292	313	0.86
Non-Cytoplasmic	314	319	0.67
Transmembrane Helix	320	341	0.87
Cytoplasmic	342	432	0.81

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLLKEEDEG TRRTSVPTQL MKLKRTHWWI LVFISIFFLI SAQAIAVLLG RFYYNEGGNS  60
   61 KWISTLVQTC GFPILYLPLC FLPASHSSSS SCSFKTLVWI YLSLGFAIGL DNLLYSFGLL 120
  121 YLSASTYSIL CSSQLAFNGV FSYYINSQKI TCLILFSVLF LSVSAVLVSL DDDSNSPSGD 180
  181 SKWSYLIGCL CTVFASLIYS LQLSLMQFSF ENVLKSETFS MVLEMQIYTS LVASCVAVIG 240
  241 LFASGEWMLL SVEMEEFHEG QVIYVLTLVG TAVSWQLGSV GAVALIFLVS SLFSNLIGTL 300
  301 SLIVTPLAAI AVFHDKLTEV KMVAMLIAFM GFGFYIYQNY LDDLKVQRAR EAQAEYLFLR 360
  361 AKVLCRIYIR NRSTYEVKYN GGFIENLGDT HVVSEDHDVA DLETNMVESN KHVDDSTLKA 420
  421 SSSKRKMVIK GF