YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|11357824, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLESSSSVS GQQRSLTQSR SSYEERGRGV KEFRSWFPWL IPCFVVANVA VFVITMYVNN  60
   61 CPKKSGDCFA DFLGRFSFQN TRENPLLGPS SLTLQTMGGL DVKKVVKGDE GWRLLSCNWL 120
  121 HGGVVHLLMN MLTLLFIGIR MELRIGLLYL ISGFGGSILS ALFLRSNISV GASGAVFGLL 180
  181 GGMLSEIFIN WTIYSNKVVT IVTLVLIVAV NLGLGVLPGV DNFAHIGGFA TGFLLGFVLL 240
  241 IRPHYGWINQ RNGPGAKPHR FKIYQGILWT ISLLILVAGF IVGLISLFNN VDGNEHCSWC 300
  301 HYLSCVPTSK WSCNREPASC TTTQLGNQLS MTCLRNGKSA SYILANPSDS RINSLCVQLC 360
  361 R

Type	Start	End	Confidence
Cytoplasmic	1	35	0.98
Transmembrane Helix	36	57	0.94
Non-Cytoplasmic	58	118	0.97
Transmembrane Helix	119	138	0.94
Cytoplasmic	139	144	0.87
Transmembrane Helix	145	164	0.94
Non-Cytoplasmic	165	170	0.76
Transmembrane Helix	171	191	0.92
Cytoplasmic	192	197	0.80
Transmembrane Helix	198	217	0.94
Non-Cytoplasmic	218	223	0.75
Transmembrane Helix	224	246	0.89
Cytoplasmic	247	265	0.92
Transmembrane Helix	266	288	0.90
Non-Cytoplasmic	289	361	0.99