YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|11277065, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVMQTEARVG VSSGHGVASS SHRLTQDQRS HIESASQLLA GGLAGAFSKT CTAPLSRLTI  60
   61 LFQVQGMHTN AAALRKPSIL HEASRILNEE GLKAFWKGNL VTIAHRLPYS SVNFYAYEHY 120
  121 KKFMYMVTGM ENHKEGISSN LFVHFVAGGL AGITAASATY PLDLVRTRLA AQTKVIYYSG 180
  181 IWHTLRSITT DEGILGLYKG LGTTLVGVGP SIAISFSVYE SLRSYWRSTR PHDSPIMVSL 240
  241 ACGSLSGIAS STATFPLDLV RRRKQLEGIG GRAVVYKTGL LGTLKRIVQT EGARGLYRGI 300
  301 LPEYYKVVPG VGICFMTYET LKLYFKDLSS NL

Type	Start	End	Confidence
Cytoplasmic	1	139	0.74
Transmembrane Helix	140	160	0.80
Non-Cytoplasmic	161	194	0.56
Transmembrane Helix	195	219	0.76
Cytoplasmic	220	235	0.45
Transmembrane Helix	236	257	0.84
Non-Cytoplasmic	258	332	0.48