YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|25406452, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.45
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	13	0.67
Transmembrane Helix	14	29	0.67
Non-Cytoplasmic	30	72	0.42
Transmembrane Helix	73	95	0.90
Cytoplasmic	96	104	0.52
Transmembrane Helix	105	127	0.80
Non-Cytoplasmic	128	143	0.46
Transmembrane Helix	144	161	0.45
Cytoplasmic	162	244	0.92
Transmembrane Helix	245	266	0.93
Non-Cytoplasmic	267	285	0.88
Transmembrane Helix	286	306	0.92
Cytoplasmic	307	322	0.89
Transmembrane Helix	323	346	0.81
Non-Cytoplasmic	347	361	0.76
Transmembrane Helix	362	376	0.57
Cytoplasmic	377	389	0.51
Transmembrane Helix	390	413	0.88
Non-Cytoplasmic	414	415	0.57

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLLELFIAS SKPVVETLLI TSVGFYLALD TVNLLGHDAR KHLNNIVFYV FSPSLIGSRL  60
   61 ADSVTYESLV KMWFMPVNVL LTFMIGSLLG WIVIVITKPP SQLRGLIISC CASGNLGTMP 120
  121 LIIIPAICKE KGGPFGDSES CEKYGMGYVT LSMTAFFISV YKHDTNWYVS GGNGLLMDLY 180
  181 INLMRVLSNS PVETHTHSIE SNYDDSCKVQ LISSKEEEKE EDNHQVGRWE EVKQRVVSLS 240
  241 KKVNLGSIFA PATIAAIIAL VIGLITPLRN LIIGTVAPFR VIQDSLTLLG DGAIPAMTLI 300
  301 LGGNLLKGMR RSEVRSSEMK NSCIIGVLVA RYILLPVSGV LLVRGAYKLD LVTSEPLYQF 360
  361 VLLLQYAVPP AMNLGTKTQL FGAGESECSV IMLWTYSLAA VSLTVWPTFF MWLVT