YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|7413595, gi\|1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDDKDKYREV VEHWSCEGTS PALMVGDSTE ITEMLSPSQH QRWRGLVLDI QSREAHGDFL  60
   61 RANGSLIHSP VSKRFKFSPM SSPRTGRRVG SMSPSSSRNR TNQKNFKNRN HSADIEEGVV 120
  121 SPLGDGSDKS YIPRTWSLTN LLAPRKSKKT ESFITHSNPE SMNGRYAVEV DPVTSMKGER 180
  181 LLPIRRTRSV PTFFNKDGSV KPSSVFRVIP TPSRGDEKRL EMTQASKLSK LHDENDDGGE 240
  241 DVPEEEAVCR ICMVEMEEDE EAFKMECMCK GELALAHKTC TIKWFTIKGN ITCDVCKQEV 300
  301 RNLPVTLLRV QDSQNRSRAA RDIEISRFNN VWQDIPILVI VSMLAYFCFL EQLLIIDMKS 360
  361 SAVAIALPFS CIIGLLASMI STTMVKKNYV WIYATVQFGF VVLFAQLFYR VVRFDVKQPV 420
  421 MCIVLATMIG FGLTMTGTTA INEYLKWRRS NSHLPEEPAS TQVV

Type	Start	End	Confidence
Non-Cytoplasmic	1	330	0.63
Transmembrane Helix	331	355	0.79
Cytoplasmic	356	361	0.53
Transmembrane Helix	362	383	0.91
Non-Cytoplasmic	384	388	0.54
Transmembrane Helix	389	412	0.87
Cytoplasmic	413	419	0.56
Transmembrane Helix	420	441	0.92
Non-Cytoplasmic	442	464	0.59