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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: RPK2_ARATH
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.98
Topology Confidence: 0.86
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSLPSSVIK WRFFRRQMPS DVVFSLCLLC FASCLAGKIT VLADSDKSVL LRFKKTVSDP  60
   61 GSILASWVEE SEDYCSWFGV SCDSSSRVMA LNISGSGSSE ISRNRFTCGD IGKFPLYGFG 120
  121 VRRDCTGNHG ALAGNLPSVI MSLTGLRVLS LPFNSFSGEI PVGIWGMEKL EVLDLEGNLM 180
  181 TGSLPDQFTG LRNLRVMNLG FNRVSGEIPN SLQNLTKLEI LNLGGNKLNG TVPGFVGRFR 240
  241 VLHLPLNWLQ GSLPKDIGDS CGKLEHLDLS GNFLTGRIPE SLGKCAGLRS LLLYMNTLEE 300
  301 TIPLEFGSLQ KLEVLDVSRN TLSGPLPVEL GNCSSLSVLV LSNLYNVYED INSVRGEADL 360
  361 PPGADLTSMT EDFNFYQGGI PEEITRLPKL KILWVPRATL EGRFPGDWGS CQNLEMVNLG 420
  421 QNFFKGEIPV GLSKCKNLRL LDLSSNRLTG ELLKEISVPC MSVFDVGGNS LSGVIPDFLN 480
  481 NTTSHCPPVV YFDRFSIESY SDPSSVYLSF FTEKAQVGTS LIDLGSDGGP AVFHNFADNN 540
  541 FTGTLKSIPL AQERLGKRVS YIFSAGGNRL YGQFPGNLFD NCDELKAVYV NVSFNKLSGR 600
  601 IPQGLNNMCT SLKILDASVN QIFGPIPTSL GDLASLVALN LSWNQLQGQI PGSLGKKMAA 660
  661 LTYLSIANNN LTGQIPQSFG QLHSLDVLDL SSNHLSGGIP HDFVNLKNLT VLLLNNNNLS 720
  721 GPIPSGFATF AVFNVSSNNL SGPVPSTNGL TKCSTVSGNP YLRPCHVFSL TTPSSDSRDS 780
  781 TGDSITQDYA SSPVENAPSQ SPGKGGFNSL EIASIASASA IVSVLIALVI LFFYTRKWHP 840
  841 KSKIMATTKR EVTMFMDIGV PITFDNVVRA TGNFNASNLI GNGGFGATYK AEISQDVVVA 900
  901 IKRLSIGRFQ GVQQFHAEIK TLGRLRHPNL VTLIGYHASE TEMFLVYNYL PGGNLEKFIQ 960
  961 ERSTRDWRVL HKIALDIARA LAYLHDQCVP RVLHRDVKPS NILLDDDCNA YLSDFGLARL1020
 1021 LGTSETHATT GVAGTFGYVA PEYAMTCRVS DKADVYSYGV VLLELLSDKK ALDPSFVSYG1080
 1081 NGFNIVQWAC MLLRQGRAKE FFTAGLWDAG PHDDLVEVLH LAVVCTVDSL STRPTMKQVV1140
 1141 RRLKQLQPPS C

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle