YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|7485327, gi\|7...
Protein type:	Transmembrane
Type Confidence:	0.90
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAANDSSNAI DIDGNLDSDS NLNTDGDEAT DNDSSKALVT IPAPAVCLFR FAGDAAGGAV  60
   61 MGSIFGYGLF KKKGFKGSFA DAGQSAKTFA VLSGVHSLVV CLLKQIRGKD DAINVGVAGC 120
  121 CTGLALSFPG APQALLQSCL TFGAFSFILE GLNKRQTALA HSVSLRHQTG LFQDHHRALP 180
  181 LSLALPIPEE IKGAFSSFCK SLAKPRKF

Type	Start	End	Confidence
Cytoplasmic	1	45	0.68
Transmembrane Helix	46	69	0.71
Non-Cytoplasmic	70	85	0.65
Transmembrane Helix	86	103	0.55
Cytoplasmic	104	111	0.63
Transmembrane Helix	112	131	0.61
Non-Cytoplasmic	132	208	0.56