YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LCV2_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEGKEATTS SLSQGLTPHQ DPDDAPKSPP NSPNSSTRKA CYGVLQSWVS KKFMTGFVVL  60
   61 FPVAVTFLIT WWFIQFVDGF FSPIYENLGV DIFGLGFITS VLFTFFVGIF ASSWLGSTVF 120
  121 WLGEQFIRRM PFVKHIYSAS KQISTAISPD QNTTAFKEVA IIRHPRIGEY AFGFITSSVT 180
  181 LQTDHGEEEL CSVYVPTNHL YIGDVFLVSS EEIIRPNLSI REGIEIIVSV GMTMPQVISH 240
  241 VDRTTNRTPH QHSLRVPLNR L

Type	Start	End	Confidence
Cytoplasmic	1	52	0.99
Transmembrane Helix	53	74	0.93
Non-Cytoplasmic	75	96	0.86
Transmembrane Helix	97	122	0.87
Cytoplasmic	123	261	0.98