YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PGPS2_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGEEDTATVD QNSFGGGKDS LLRNRHSSPL PSPTQLSSKV ITLPTVLTLG RVAAVPILVA  60
   61 TFYVDCWWGR TATTSIFIAA AITDWLDGYI ARKMRLGSEF GAFLDPVADK LMVAATLILL 120
  121 CTKPMVAVVL GPVPWLVTVP SIAIIGREIT MSAVREWAAS QNGKLSEAVA VNSLGKWKTA 180
  181 TQMIALTILL ASRDSSFERL LPSGIGLLYV SAGLSIWSLV VYMRKIWRVL LKK

Type	Start	End	Confidence
Cytoplasmic	1	39	0.94
Transmembrane Helix	40	62	0.82
Non-Cytoplasmic	63	70	0.63
Transmembrane Helix	71	90	0.85
Cytoplasmic	91	110	0.86
Transmembrane Helix	111	136	0.70
Non-Cytoplasmic	137	204	0.75
Transmembrane Helix	205	223	0.94
Cytoplasmic	224	233	0.87