YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|18406056, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.40
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDALGGCGGA GGFWGWNGFD QRRKKKSSGD RGKKRNSGSS DSVDVSRDAG GYRFPLKQAV  60
   61 TAGALTFTGD TIAQLSGRWK KRTALKQSSS ELDEGELWNI FSEHDWIRAL RMSSYGFLLY 120
  121 GPGSYAWYQF LDHSLPKPTA TNLVLKVLLN QVILGPSVIA VIFAWNNLWL GKLSELGNKY 180
  181 QKDALPTLLY GFRFWVPVSI LNFWVVPLQA RVAFMSMGSV FWNFYLSSTM SK

Type	Start	End	Confidence
Cytoplasmic	1	111	0.90
Transmembrane Helix	112	131	0.67
Non-Cytoplasmic	132	146	0.72
Transmembrane Helix	147	169	0.86
Cytoplasmic	170	188	0.64
Transmembrane Helix	189	222	0.68
Non-Cytoplasmic	223	232	0.40