YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|7269136, gi\|3...
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSKMLFSLT SPRLFSAVSR KPSSSFSPSP PSPSSRTQWT QLSPGKSISL RRRVFLLPAK  60
   61 ATTEQSVGGD NVDSNVLPYC SINKAEKKTI GEMEQEFLQA LQSFYYDGKA IMSNEEFDNL 120
  121 KEELMWEGSS VVMLSSDEQR FLEASMAYVS GNPILNDEEY DKLKLKLKVS IHFLCFSENR 180
  181 HTLIRLIDGS DIVSEGPRCS LRSKKVYSDL AVDYFKMLLL NVPATVVALG LFFFLDDITG 240
  241 FEITYIMELP EPYSFIFTWF AAVPVIVYLA LSITKLIIKD FLILKGPCPN CGTENTSFFG 300
  301 TILSISSGGK TNTVKCTNCG TAMVYDSGSR LITLPEGSQA

Type	Start	End	Confidence
Cytoplasmic	1	213	0.95
Transmembrane Helix	214	235	0.87
Non-Cytoplasmic	236	254	0.89
Transmembrane Helix	255	277	0.89
Cytoplasmic	278	340	0.97