YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|15221742, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.45
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVPAVNPPTT SHHVAVIGAG AAGLVAAREL RREGHSVVVF ERGNQIGGVW AYTPNVEPDP  60
   61 LSIDPTRPVI HSSLYSSLRT IIPRECMGFT DFPFSTGPEN KSRDPRRHPG HIEVLAYLKD 120
  121 FARKFKMDEM IRFETEVVRA EPAAENPKKW RVESRNSGDI SDEIYDAVVV CNGHYTEPRH 180
  181 ALIPGGSSVS GVDISRDIVN VTKEVHISSR STKPETYEKL SGYDNLWLHS NIETVREDGS 240
  241 VVFKNGKTVY ADTIMHCTGY KYYFPFLDTK GEVTVEDNRV GPLYKHVFPP ALSPGLSFIG 300
  301 LPWQVILFPM FELQSKWVAA VLAGRFVYDN WLADQCDYPR IEKWREQMFY KVFKRIQSQS 360
  361 STYKDDWDDD HLIAEAYEDF VKFPSNYPSS LIEREYTS

Type	Start	End	Confidence
Signal Peptide	1	27	0.49
N-region	1	18
H-region	19	24
C-region	25	27
Cleavage Site	27	28
Non-Cytoplasmic	28	398	0.89