YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|15235292, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIRDDLSLSL GIISVISWSV AEIPQIMTNY NQKSIEGVSI TFLTTWMLGD IFNVVGCLME  60
   61 PASLPVQFYT AVLYTLATLV LYVQSIYYGH IYPRLMKNRR NHQMVDVEEP LLREEAKRPS 120
  121 TKSLLCVVSV FLFLGSFNVL SGSRSMDLRG KDRVFVVGGA GARKLLEVSS GNLGENNNIG 180
  181 MWLGWAMAAI YMGGRLPQIC MNVRRGNVEG LNPLMFFFAF IGNVTYVASI LVNSVEWSKI 240
  241 EPNLPWLVDS GGCAVLDFLI LLQFFYFHCR KVEADSVKKK HETGEEAV

Type	Start	End	Confidence
Cytoplasmic	1	37	0.52
Transmembrane Helix	38	59	0.67
Non-Cytoplasmic	60	69	0.74
Transmembrane Helix	70	91	0.92
Cytoplasmic	92	120	0.96
Transmembrane Helix	121	140	0.91
Non-Cytoplasmic	141	178	0.94
Transmembrane Helix	179	199	0.88
Cytoplasmic	200	210	0.87
Transmembrane Helix	211	232	0.89
Non-Cytoplasmic	233	245	0.86
Transmembrane Helix	246	269	0.84
Cytoplasmic	270	288	0.95