YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|25406145, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.97
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTNLLALCLV LSTLLAAEVW SPSPAMTTHN TAVASEGEVI VKDGHHVVVV EYDRDGKTNT  60
   61 RVSISPPSAD QGEEKENEVE MGTSMFRNVK EKAKETASYL PHVGQGISQP VMTDEARDHH 120
  121 ATAGEVICDA FGKCRQKIAS VVGRAKDRTV DSVGETASDV REAAAHKAHD VKETVTHAAR 180
  181 DVEDTVADQA QYAKGRVTEK AHDPKEGVAH KAHDAKESVA DKAHDAKESV AQKAHDAKEK 240
  241 VREKAHDVKE TVAQKAHESK ERAKDRVREK AQELKETATH KSKNAWERVK NGAREFGSAT 300
  301 AATLSPTKVA SIVGLTGIAA AFGTSVWVTF VSSYVLASVL GRQQFGVVQS KLYPVYFKAT 360
  361 SVGILVGLFG HVLSRRRKLL TDATEMWQGV NLLSSFFMIE ANKSFVEPRA TKAMFERMKA 420
  421 EKEEGRGGER TSEQELRRKL EQLSERLSKL NTYSSWLNIL TLMSLTWHFV YLGQRLGAAC 480
  481

Type	Start	End	Confidence
Signal Peptide	1	16	0.99
N-region	1	7
H-region	8	13
C-region	14	16
Cleavage Site	16	17
Non-Cytoplasmic	17	351	0.91
Transmembrane Helix	352	373	0.67
Cytoplasmic	374	451	0.56
Transmembrane Helix	452	471	0.67
Non-Cytoplasmic	472	480	0.70