YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	XXT3_ARATH
Protein type:	Globular with Signal Peptide
Type Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKEDGFRTQ KRVSTASSAA AGVLPTTMAS GGVRRPPPRG RQIQKTFNNV KMTILCGFVT  60
   61 ILVLRGTIGI NFGTSDADVV NQNIIEETNR LLAEIRSDSD PTDSNEPPDS DLDLNMTYTL 120
  121 GPKITNWDQK RKLWLTQNPD FPSFINGKAK VLLLTGSPPK PCDNPIGDHY LLKSVKNKID 180
  181 YCRIHGIEIV YNMAHLDKEL AGYWAKLPMI RRLMLSHPEI EWIWWMDSDA LFTDMVFEIP 240
  241 LSRYENHNLV IHGYPDLLFD QKSWIALNTG SFLFRNCQWS LDLLDAWAPM GPKGPIREEA 300
  301 GKILTANLKG RPAFEADDQS ALIYLLLSQK ETWMEKVFVE NQYYLHGFWE GLVDKYEEMM 360
  361 EKYHPGLGDE RWPFITHFVG CKPCGSYADY AVERCLKSME RAFNFADNQV LKLYGFGHRG 420
  421 LLSPKIKRIR NETTFPLKFV DRFDIRRTTP LKIEARS

Type	Start	End	Confidence
Signal Peptide	1	29	0.86
N-region	1	20
H-region	21	26
C-region	27	29
Cleavage Site	29	30
Non-Cytoplasmic	30	457	0.99