YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GAE4_ARATH
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.91
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRLDDIPSS PGKFKMEKSS YLHRLRFQSS LTKFAFFSFF LLCLISLLFL RSPPSINPSS  60
   61 PSDPSRRSLR TNTYGGPAWE KRLRSSARIR TSTNNGITVL VTGAAGFVGT HVSAALKRRG 120
  121 DGVIGLDNFN DYYDPSLKRA RRALLERSGI FIVEGDINDV ELLRKLFKIV SFTHVMHLAA 180
  181 QAGVRYAMEN PSSYVHSNIA GFVNLLEICK SVNPQPAIVW ASSSSVYGLN TKVPFSEKDK 240
  241 TDQPASLYAA TKKAGEEIAH TYNHIYGLSL TGLRFFTVYG PWGRPDMAYF FFTKDILKGK 300
  301 SISIFESANH GTVARDFTYI DDIVKGCLAA LDTAEKSTGS GGKKRGPAQL RVFNLGNTSP 360
  361 VPVSDLVRIL ERQLKVKAKK NLIKMPRNGD VPFTHANISL AQRELGYKPT TDLQTGLKKF 420
  421 VRWYLSYYSG DKKAAAR

Type	Start	End	Confidence
Cytoplasmic	1	30	0.91
Transmembrane Helix	31	50	0.92
Non-Cytoplasmic	51	437	0.93