YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FBT1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.92
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	194	0.75
Transmembrane Helix	195	214	0.92
Non-Cytoplasmic	215	220	0.75
Transmembrane Helix	221	239	0.96
Cytoplasmic	240	258	0.78
Transmembrane Helix	259	278	0.91
Non-Cytoplasmic	279	285	0.79
Transmembrane Helix	286	307	0.93
Cytoplasmic	308	343	0.95
Transmembrane Helix	344	364	0.85
Non-Cytoplasmic	365	384	0.91
Transmembrane Helix	385	407	0.87
Cytoplasmic	408	414	0.92
Transmembrane Helix	415	434	0.96
Non-Cytoplasmic	435	452	0.76
Transmembrane Helix	453	472	0.93
Cytoplasmic	473	482	0.80
Transmembrane Helix	483	505	0.87
Non-Cytoplasmic	506	518	0.74
Transmembrane Helix	519	540	0.88
Cytoplasmic	541	560	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASRSLFSIS ISPSQFTVLP SINNERRRLA IAARSHRLSR RKIRKRPPDR DMSSIVSIPE  60
   61 LPRRRDSEES LLLDSRISVA EGDTSNTDVE GDRDTTSSIR TQPPPRKGRN LSSSRIKFYG 120
  121 VELSPDNVAV AMVYFVQGVL GLARLAVSFY LKDDLHLDPA ETAVITGLSS LPWLVKPLYG 180
  181 FISDSVPLFG YRRRSYLVLS GLLGAFSWSL MAGFVDSKYS AAFCILLGSL SVAFSDVVVD 240
  241 SMVVERARGE SQSVSGSLQS LCWGSSAFGG IVSSYFSGSL VESYGVRFVF GVTALLPLIT 300
  301 SAVAVLVNEQ RVVRPASGQK ENITLLSPGF LQTSKQNMIQ LWGAIKQPNV FLPTLFIFLW 360
  361 QATPHSDSAM FYFTTNKLGF TPEFLGRVKL VTSIASLLGV GLYNGFLKTV PLRKIFLVTT 420
  421 IFGTGLGMTQ VILVSGFNRQ LGISDEWFAI GDSLILTVLA QASFMPVLVL AARLCPEGME 480
  481 ATLFATLMSI SNGGSVLGGL MGAGLTQAFG ITRDSFGNLS TLIILCNLSS LLPLPLLGLL 540
  541 PRDSPDTLTK DDADVEMKSN