YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PX11B_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLDTVDKLV VFLAKRDGID KLVKTFQYVA KLACWHVEAT RPEAADRFKK WEVASGLSRK  60
   61 AFRTGRSLTG FNALRRNPGA TPMIRFLAVL ANSGEMVYFF FDHFLWLSRI GSIDAKLAKK 120
  121 MSFISAFGES FGYTFFIIID CIFIKQRLKS LKKLQHSTDE PKEEIGAKIS EIRGDIVMRL 180
  181 MGISANVADL LIALAEIHPN PFCNHTITLG ISGLVSAWAG WYRNWPS

Type	Start	End	Confidence
Cytoplasmic	1	82	0.98
Transmembrane Helix	83	101	0.93
Non-Cytoplasmic	102	122	0.84
Transmembrane Helix	123	144	0.91
Cytoplasmic	145	175	0.97
Transmembrane Helix	176	195	0.81
Non-Cytoplasmic	196	201	0.65
Transmembrane Helix	202	222	0.89
Cytoplasmic	223	227	0.68