YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PUP1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNGLIIINC IILTIGTCGG PLLTRLYFTN GGKRIWFMSF LSTAGFPIIL IPLLVSFLSR  60
   61 RRSNRNPNNA ENKRKTKLFL METPLFIASI VIGLLTGLDN YLYSYGLAYL PVSTSSLIIG 120
  121 TQLAFNALFA FLLVKQKFTP FSINAVVLLT VGIGILALHS DGDKPAKESK KEYVVGFLMT 180
  181 VVAALLYAFI LPLVELTYKK ARQEITFPLV LEIQMVMCLA ATFFCVIGMF IVGDFKVIAR 240
  241 EAREFKIGGS VFYYALIVIT GIIWQGFFLG AIGIVFCASS LASGVLISVL LPVTEVFAVV 300
  301 CFREKFQAEK GVSLLLSLWG FVSYFYGEFK SGKKVVDKPQ PPETELPILP VSDYVA

Type	Start	End	Confidence
Cytoplasmic	1	6	0.84
Transmembrane Helix	7	28	0.92
Non-Cytoplasmic	29	34	0.92
Transmembrane Helix	35	58	0.92
Cytoplasmic	59	77	0.96
Transmembrane Helix	78	98	0.93
Non-Cytoplasmic	99	137	0.46
Transmembrane Helix	138	159	0.65
Cytoplasmic	160	172	0.57
Transmembrane Helix	173	194	0.89
Non-Cytoplasmic	195	212	0.55
Transmembrane Helix	213	233	0.91
Cytoplasmic	234	249	0.50
Transmembrane Helix	250	274	0.80
Non-Cytoplasmic	275	275	0.30
Transmembrane Helix	276	301	0.72
Cytoplasmic	302	356	0.60