YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CRPM4_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRGEFLAMK TEENAANLIN SDMNEFVAAA KKLVKDVGML GGVGFGTSVL QWAASIFAIY  60
   61 LLILDRTNWK TKMLTTLLVP YIFFTLPSVI FQFFSGDFGK WIALIAIIVR LFFPKEFPEW 120
  121 LEIPVALILI VVVSPSLIAW TLRESWVGAV ICLVIACYLF HEHIKASGGF KNSFTQKNGI 180
  181 SNTIGIVALL VYPVWTIFFH IF

Type	Start	End	Confidence
Non-Cytoplasmic	1	39	0.56
Transmembrane Helix	40	64	0.83
Cytoplasmic	65	72	0.52
Transmembrane Helix	73	94	0.75
Non-Cytoplasmic	95	97	0.48
Transmembrane Helix	98	113	0.63
Cytoplasmic	114	119	0.74
Transmembrane Helix	120	139	0.91
Non-Cytoplasmic	140	145	0.63
Transmembrane Helix	146	164	0.88
Cytoplasmic	165	178	0.79
Transmembrane Helix	179	199	0.92
Non-Cytoplasmic	200	202	0.67