YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PUP11_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	41	0.97
Transmembrane Helix	42	63	0.91
Non-Cytoplasmic	64	77	0.83
Transmembrane Helix	78	97	0.91
Cytoplasmic	98	108	0.82
Transmembrane Helix	109	131	0.84
Non-Cytoplasmic	132	139	0.62
Transmembrane Helix	140	161	0.85
Cytoplasmic	162	166	0.83
Transmembrane Helix	167	187	0.91
Non-Cytoplasmic	188	201	0.88
Transmembrane Helix	202	223	0.93
Cytoplasmic	224	241	0.82
Transmembrane Helix	242	262	0.90
Non-Cytoplasmic	263	282	0.83
Transmembrane Helix	283	306	0.75
Cytoplasmic	307	308	0.42
Transmembrane Helix	309	330	0.69
Non-Cytoplasmic	331	335	0.46
Transmembrane Helix	336	358	0.79
Cytoplasmic	359	379	0.57

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKEPVRVLV TGAAGNQEPI LVKEESVVGI PTPLLKLKSW QWWVLVSVNI FFLIGGQAAS  60
   61 VLLGRFYYDE GGNSKWMATL VQTAAFPILY IPLLLLPSSA SVESSESSCS LKYIVLIYVL 120
  121 LGVIIAGDNM LYSVGLLYLS ASTYSLICAT QLAFNAVFSY FINAQKFTAL ILNSVVLLSF 180
  181 SAALIALNDD ADTPSGVSRS KYIVGFVCTL AASALYSLLL SLMQFSFEKI LKRETFSVVL 240
  241 EMQIYTSLVA TCVSVIGLFA SGEWRTLHGE MEGYHKGQAS YVLTLVWTAV TWQVCSVGVV 300
  301 GLIFLVTSLF SNVISTLSLA VTPLAALVVF RDKMSGVKIM AMLIAIWGFA SYVYQNHIDD 360
  361 LKVRQARQQA QAGRVEPPC