YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	RGXT3_ARATH
Protein type:	Transmembrane
Type Confidence:	0.88
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQQSQRPIS NRHISLLNRN GLILLLLLAL FVILGVFLPL TKSSLFMFPN TTSSSLSPSS  60
   61 SLSVSDWRDY SLAQAVKFVA KNETVIVCAV SYPFLPFLNN WLISISRQKH QEKVLVIAED 120
  121 YATLYKVNEK WPGHAVLIPP ALDPQSAHKF GSQGFFNLTS RRPQHLLNIL ELGYNVMYND 180
  181 VDMVWLQDPF DYLQGSYDAY FMDDMIAIKP LNHSHDLPPL SRSGVTYVCS CMIFLRSTDG 240
  241 GKLLMKTWVE EIQAQPWNNT QAKKPHDQPA FNRALHKTAN QVKVYLLPQS AFPSGGLYFR 300
  301 NETWVNETRG KHVIVHNNYI IGYDKKMKRF QDFSLWLVDD HALESPLGKL EIYQEQNTTT 360
  361 EGKNLTKIVR KQRKNRGKKH KLP

Type	Start	End	Confidence
Cytoplasmic	1	20	0.81
Transmembrane Helix	21	40	0.85
Non-Cytoplasmic	41	383	0.93