YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ANTR5_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	9	0.93
Transmembrane Helix	10	30	0.88
Non-Cytoplasmic	31	48	0.77
Transmembrane Helix	49	69	0.82
Cytoplasmic	70	77	0.77
Transmembrane Helix	78	95	0.95
Non-Cytoplasmic	96	102	0.79
Transmembrane Helix	103	126	0.88
Cytoplasmic	127	136	0.86
Transmembrane Helix	137	158	0.92
Non-Cytoplasmic	159	167	0.76
Transmembrane Helix	168	187	0.93
Cytoplasmic	188	224	0.95
Transmembrane Helix	225	246	0.88
Non-Cytoplasmic	247	272	0.90
Transmembrane Helix	273	294	0.93
Cytoplasmic	295	305	0.89
Transmembrane Helix	306	325	0.93
Non-Cytoplasmic	326	330	0.81
Transmembrane Helix	331	350	0.94
Cytoplasmic	351	359	0.83
Transmembrane Helix	360	380	0.91
Non-Cytoplasmic	381	404	0.86
Transmembrane Helix	405	425	0.95
Cytoplasmic	426	432	0.83

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLSNIPQRY VIVFLTFLST CVCYIERVGF SIAYTVAADA AGINQSSKGT ILSTFFVGYA  60
   61 CSQVPGGWAA QKIGGRKVLL LSFVLWSSTC FLVPLDPNRV GLLVVARLLV GVAQGFIFPS 120
  121 IHTVLAQWVP PHERSRLVSI TTSGMYLGAA LGMWLLPALV ELRGPESVFL AEALAGVIWS 180
  181 LLWIRYATDP PRSEHPKAAA AGFGGALLPT NVNHHKVTHI PWKKIMLSLP VWAIVVNNFT 240
  241 FHYALYVLMN WLPTYFELGL QISLQGMDSS KMVPYLNMFV FSIVGGFIAD YLITKRILSV 300
  301 TRTRKFLNTV GFLIASAALM VLPMFRTENG VILCSSVALG FLALGRAGFA VNHMDIAPRY 360
  361 AGIVMGVSNT AGTLAGIIGV DLTGKLLEAS KLVYSDLSHP ESWRVVFFIP GLLCIFSSVV 420
  421 FLLFSTGERI FD