YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	P24D4_ARATH
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.97
Topology Confidence:	0.92
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKKMIPTTI LLSALIFSLS PICEAVWLTV PHTGSKCVSE EIQSNVIVLA DYLVISEEHS  60
   61 IFPTVSVKVT APYGTVLHHR ENTTNGQFAF TTQESGTYLA CFEADAKSHG NKDFSINIDW 120
  121 KTGIAAKDWD SIARKEKIEG VELEFKKLEG AVEAIHENLI YLRNREAEMR IVSEKTNSRV 180
  181 AWYSIMSLGI CIVVSGLQIL YLKQYFEKKK LI

Type	Start	End	Confidence
Signal Peptide	1	25	0.99
N-region	1	16
H-region	17	22
C-region	23	25
Cleavage Site	25	26
Non-Cytoplasmic	26	179	0.99
Transmembrane Helix	180	202	0.92
Cytoplasmic	203	212	0.94