YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|25054947, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVVGGGGEGD QKRSSGEMMA MASLFNDQQN PIQQFQVKFK EVETNFKTWL SKQSIPVEAA  60
   61 VVSTMSGVQG AFIGGLMGTL SPEMPQAGVD PQAIASMKQA QALVGGPWVQ ARNFAAITGV 120
  121 NAGIASVMKR IRGKEDIESA VVAALGSGFA YSLVSQGLQG QPMNAITTAA GFAVFQGVFF 180
  181 KLGERFSKPS TEDPFFTRGR TMLVKLGLEK YEKNFKKGLL TDPTLPLLTD SALKDANIPP 240
  241 GPRLMILDHI QRDPEIKGKR K

Type	Start	End	Confidence
Cytoplasmic	1	58	0.90
Transmembrane Helix	59	78	0.76
Non-Cytoplasmic	79	108	0.78
Transmembrane Helix	109	128	0.68
Cytoplasmic	129	136	0.78
Transmembrane Helix	137	155	0.80
Non-Cytoplasmic	156	162	0.69
Transmembrane Helix	163	180	0.83
Cytoplasmic	181	261	0.88