YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PUP4_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	24	0.98
Transmembrane Helix	25	46	0.90
Non-Cytoplasmic	47	60	0.76
Transmembrane Helix	61	82	0.89
Cytoplasmic	83	92	0.96
Transmembrane Helix	93	115	0.88
Non-Cytoplasmic	116	121	0.75
Transmembrane Helix	122	142	0.90
Cytoplasmic	143	151	0.75
Transmembrane Helix	152	170	0.94
Non-Cytoplasmic	171	184	0.88
Transmembrane Helix	185	205	0.94
Cytoplasmic	206	213	0.86
Transmembrane Helix	214	238	0.80
Non-Cytoplasmic	239	259	0.85
Transmembrane Helix	260	278	0.91
Cytoplasmic	279	284	0.69
Transmembrane Helix	285	310	0.82
Non-Cytoplasmic	311	316	0.74
Transmembrane Helix	317	338	0.90
Cytoplasmic	339	382	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDGRVNADP QQEENMVKPP VKRSLTLLIV TYFFLFFGSI ASSLLAKYYF VYGGSSRWVS  60
   61 TWVQSAGFPL LLILIYFPHY VLKTTTRRPF TRFTLRHLIF SVLIGLVLGF NNFLFSWGTS 120
  121 YLPVSTSSLL LSTQLVFTLI LSRIIVKQKI TFSNLNCVVL LTLSSVLLAL DSSKDKPSGL 180
  181 TKTKYFIGYV STIGAGLLFA LYLPVTEKLY RTVYCYAMVM EVQLVMEFAA TVFATIGMAC 240
  241 EGGFKEMVKE ANHVFTKGPT FYWTFAILAN VVTWQLSFAA TSGMVYLTSG ITGGICMTAL 300
  301 LAMNVIGGVV AYGDVFGGVK IVSTVLCIWG FSSYTYGMYM KMKKEEKEKG EYSGVKTTED 360
  361 SGEMEVEMGN VKDDVAAADD RA