YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PROT3_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	29	0.83
Transmembrane Helix	30	49	0.79
Non-Cytoplasmic	50	56	0.61
Transmembrane Helix	57	81	0.85
Cytoplasmic	82	110	0.75
Transmembrane Helix	111	133	0.83
Non-Cytoplasmic	134	147	0.61
Transmembrane Helix	148	166	0.95
Cytoplasmic	167	172	0.58
Transmembrane Helix	173	195	0.89
Non-Cytoplasmic	196	215	0.72
Transmembrane Helix	216	235	0.83
Cytoplasmic	236	253	0.86
Transmembrane Helix	254	276	0.94
Non-Cytoplasmic	277	295	0.82
Transmembrane Helix	296	315	0.90
Cytoplasmic	316	336	0.86
Transmembrane Helix	337	358	0.85
Non-Cytoplasmic	359	365	0.65
Transmembrane Helix	366	386	0.90
Cytoplasmic	387	401	0.88
Transmembrane Helix	402	424	0.92
Non-Cytoplasmic	425	436	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSKNRINNV GEGVDIEIPD TAHQISSDSW FQAAFVLTTS INSAYVLGYS GTVMVPLGWI  60
   61 GGVVGLILAT AISLYANTLV AKLHEFGGKR HIRYRDLAGF IYGRKAYCLT WVLQYVNLFM 120
  121 INCGFIILAG SALKAVYVLF RDDHAMKLPH FIAIAGLICA VFAIGIPHLS ALGIWLAVST 180
  181 ILSLIYIVVA IVLSVKDGVK APSRDYEIQG SPLSKLFTIT GAAATLVFVF NTGMLPEIQA 240
  241 TVKQPVVKNM MKALYFQFTV GVLPMFAVVF IGYWAYGSST SPYLLNNVNG PLWVKALANI 300
  301 SAILQSVISL HIFASPTYEY MDTKFGIKGN PLALKNLLFR IMARGGYIAV STLLSALLPF 360
  361 LGDFMSLTGA VSTFPLTFIL ANHMYYKAKN NKLNTLQKLC HWLNVVFFSL MSVAAAIAAL 420
  421 RLIALDSKNF HVFADL