YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NDR1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.91
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNNQNEDTEG GRNCCTCCLS FIFTAGLTSL FLWLSLRADK PKCSIQNFFI PALGKDPNSR  60
   61 DNTTLNFMVR CDNPNKDKGI YYDDVHLNFS TINTTKINSS ALVLVGNYTV PKFYQGHKKK 120
  121 AKKWGQVKPL NNQTVLRAVL PNGSAVFRLD LKTQVRFKIV FWKTKRYGVE VGADVEVNGD 180
  181 GVKAQKKGIK MKKSDSSFPL RSSFPISVLM NLLVFFAIR

Type	Start	End	Confidence
Non-Cytoplasmic	1	13	0.50
Transmembrane Helix	14	34	0.64
Cytoplasmic	35	196	0.66
Transmembrane Helix	197	218	0.64
Non-Cytoplasmic	219	219	0.89