YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	BRTL1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAMVVPKEGL VVMDKESVSS ASSDSHLRLQ PHFPDFTIPV KDFFKSREAR EFLSGALAGA  60
   61 MTKAVLAPLE TIRTRMIVGV GSRSIPGSFL EVVQKQGWQG LWAGNEINMI RIIPTQAIEL 120
  121 GTFEWVKRAM TSAQVKLKKI EDAKIEIGDF SFSPSISWIS PVAVAGASAG IASTLVCHPL 180
  181 EVLKDRLTVS PEIYPSLSLA IPRIFRADGI RGFYAGLGPT LVGMLPYSTC YYFMYDKMKT 240
  241 SYCKSKNKKA LSRPEMLVLG ALAGLTASTI SFPLEVARKR LMVGALKGEC PPNMAAAIAE 300
  301 VVKKEGVMGL YRGWGASCLK VMPSSGITWV FYEAWKDILL AANTKPLI

Type	Start	End	Confidence
Cytoplasmic	1	155	0.50
Transmembrane Helix	156	178	0.67
Non-Cytoplasmic	179	211	0.50
Transmembrane Helix	212	235	0.77
Cytoplasmic	236	255	0.56
Transmembrane Helix	256	274	0.85
Non-Cytoplasmic	275	348	0.52