YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TAAC_ARATH
Protein type:	Transmembrane
Type Confidence:	0.90
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGEEKSLLQF RSFPSLKTSD FALTEEPSWR LENNVSSNRR RGNKRSGGVF TNFASLSVAI  60
   61 RRDRRESTFN GRNGGGGGAF ASVSVVIPKE EDEFAPTSAQ LLKNPIALLS IVPKDAALFF 120
  121 AGAFAGAAAK SVTAPLDRIK LLMQTHGVRA GQQSAKKAIG FIEAITLIGK EEGIKGYWKG 180
  181 NLPQVIRIVP YSAVQLFAYE TYKKLFRGKD GQLSVLGRLG AGACAGMTST LITYPLDVLR 240
  241 LRLAVEPGYR TMSQVALNML REEGVASFYN GLGPSLLSIA PYIAINFCVF DLVKKSLPEK 300
  301 YQQKTQSSLL TAVVAAAIAT GTCYPLDTIR RQMQLKGTPY KSVLDAFSGI IAREGVVGLY 360
  361 RGFVPNALKS MPNSSIKLTT FDIVKKLIAA SEKEIQRIAD DNRKKASPNT IDEQT

Type	Start	End	Confidence
Cytoplasmic	1	213	0.62
Transmembrane Helix	214	234	0.67
Non-Cytoplasmic	235	271	0.84
Transmembrane Helix	272	290	0.65
Cytoplasmic	291	306	0.58
Transmembrane Helix	307	326	0.67
Non-Cytoplasmic	327	415	0.68