YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	B3GT3_ARATH
Protein type:	Transmembrane
Type Confidence:	0.88
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTKIKGELF PSRSLVSKKW TFLLCFGSFC FGILFTDRMW IIPESKDMPR PSVSTEAERL  60
   61 KLISEGCDPK TLYQKEVNRD PQALFGEVSK THNAIQTLDK TISSLEMELA AARSAQESLV 120
  121 NGAPISNDME KKQLPGKRRY LMVVGINTAF SSRKRRDSVR TTWMPSGEKR KKLEEEKGII 180
  181 IRFVIGHSAT AGGILDRSIE AEDKKHGDFL RLDHVEGYLE LSGKTKTYFS TAVSKWDAEF 240
  241 YVKVDDDVHV NIATLGETLV RHRKKHRVYL GCMKSGPVLS QKGVRYHEPE YWKFGENGNK 300
  301 YFRHATGQLY AISRDLASYI SLNQHVLHKY ANEDVTLGAW FIGLDVTHID DRRLCCGTPP 360
  361 DCEWKAQAGN ICVASFDWTC SGICRSADRI KEVHKRCGEP ENAIWKARF

Type	Start	End	Confidence
Cytoplasmic	1	19	0.85
Transmembrane Helix	20	41	0.83
Non-Cytoplasmic	42	409	0.99