YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CRR12_ARATH
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.97
Topology Confidence:	0.91
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFATKTVLFI AVVSLLGTFS SAAVDTFIYG GCSQEKYFPG SPYESNVNSL LTSFVSSASL  60
   61 YTYNNFTTNG ISGDSSSVYG LYQCRGDLSS GSGDCARCVA RAVSRLGSLC AMASGGALQL 120
  121 EGCFVKYDNT TFLGVEDKTV VVRRCGPPVG YNSDEMTRRD SVVGSLAASS GGSYRVGVSG 180
  181 ELQGVAQCTG DLSATECQDC LMEAIGRLRT DCGGAAWGDV YLAKCYARYS ARGGHSRANG 240
  241 YGGNRNNNDD DEIEKTLAII VGLIAGVTLL VVFLSFMAKS CERGKGGK

Type	Start	End	Confidence
Signal Peptide	1	22	0.99
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	256	0.99
Transmembrane Helix	257	278	0.91
Cytoplasmic	279	288	0.93