YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	COV1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGDEKPVIVM ANRERDRELL IPVADSGDKD DGSSSKPSSS SSASSSSHQS SHETLSLFIR  60
   61 GWASKKFMTG CVILLPIAIT FYITWWFIHF VDGFFSPIYA QLGINVFGFG FLTSIAFIFL 120
  121 VGVFMSSWLG ASVLNLGEWF IKRMPFVRHI YNASKQISTA ISPDQNTQAF KEVAIIRHPR 180
  181 VGEYAFGFIT STVVLQNYPT EEELCCVYVP TNHLYIGDIL LVNSNDVIRP NLSVREGIEI 240
  241 VVSGGMSMPQ ILSTVDKPLA SIDRATSL

Type	Start	End	Confidence
Cytoplasmic	1	66	0.99
Transmembrane Helix	67	89	0.92
Non-Cytoplasmic	90	108	0.86
Transmembrane Helix	109	134	0.83
Cytoplasmic	135	268	0.98