YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	HSDD1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.93
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVMEVTETER WCVVTGGRGF AARHLVEMLV RYQMFHVRIA DLAPAIVLNP HEETGILGEA  60
   61 IRSGRVQYVS ADLRNKTQVV KGFQGAEVVF HMAAPDSSIN NHQLQYSVNV QGTTNVIDAC 120
  121 IEVGVKRLIY TSSPSVVFDG VHGTLNADES LPYPPKHNDS YSATKAEGEA LILKANGRSG 180
  181 LLTCCIRPSS IFGPGDKLMV PSLVTAARAG KSKFIIGDGS NFYDFTYVEN VVHAHVCAER 240
  241 ALASGGEVCA KAAGQAYFIT NMEPIKFWEF MSQLLEGLGY ERPSIKIPAS LMMPIAYLVE 300
  301 LAYKLLGPYG MKVPVLTPSR VRLLSCNRTF DSSKAKDRLG YSPVVPLQEG IKRTIDSFSH 360
  361 LKAQNQPKTE VTETIQWKKQ TLIAIVILIT LYHNFVATTG SSSVIITAVS KVLLVSSIFM 420
  421 FINGILPEKM KVFGSKKID

Type	Start	End	Confidence
Cytoplasmic	1	380	0.54
Transmembrane Helix	381	396	0.63
Non-Cytoplasmic	397	403	0.70
Transmembrane Helix	404	426	0.81
Cytoplasmic	427	439	0.82