YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TI171_ARATH
Protein type:	Transmembrane
Type Confidence:	0.92
Topology Confidence:	0.36
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGTPESSREP CPDRILDDVG GAFAMGAVGG SAYHLIRGIY NSPGGARLSG GVQALRMSGP  60
   61 RSGGSFSVWG GLYSTFDCAL VYARQKEDPW NSILSGAATG GFLSLRQGLG ASARSALVGG 120
  121 VLLAMIEGVG IMLNKVQSTA HNEQFMEDHA ATSLPYGMGQ ISGQSVPVPE TSSSSSGSVS 180
  181 WFGSLFKKKK ETEDHHSESR THILESFDAP PVPTYEFK

Type	Start	End	Confidence
Cytoplasmic	1	18	0.69
Transmembrane Helix	19	36	0.65
Non-Cytoplasmic	37	64	0.58
Transmembrane Helix	65	83	0.53
Cytoplasmic	84	89	0.49
Transmembrane Helix	90	109	0.36
Non-Cytoplasmic	110	112	0.43
Transmembrane Helix	113	134	0.70
Cytoplasmic	135	218	0.59