YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	DTX56_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	36	0.88
Transmembrane Helix	37	55	0.81
Non-Cytoplasmic	56	67	0.69
Transmembrane Helix	68	90	0.81
Cytoplasmic	91	110	0.69
Transmembrane Helix	111	131	0.95
Non-Cytoplasmic	132	152	0.79
Transmembrane Helix	153	173	0.72
Cytoplasmic	174	178	0.60
Transmembrane Helix	179	201	0.78
Non-Cytoplasmic	202	210	0.72
Transmembrane Helix	211	232	0.94
Cytoplasmic	233	252	0.82
Transmembrane Helix	253	274	0.78
Non-Cytoplasmic	275	292	0.77
Transmembrane Helix	293	315	0.80
Cytoplasmic	316	334	0.82
Transmembrane Helix	335	356	0.94
Non-Cytoplasmic	357	377	0.84
Transmembrane Helix	378	399	0.88
Cytoplasmic	400	407	0.84
Transmembrane Helix	408	429	0.91
Non-Cytoplasmic	430	436	0.80
Transmembrane Helix	437	458	0.94
Cytoplasmic	459	491	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSETSKSESL DPEVSEGLCS KTLMQSIVHE LKLQMRIGLP LVVMNLLWFG KMTTTSVFLG  60
   61 RQGELNLAGG SLGFSFANVT GFSVLYGISA AMEPICGQAF GAKNFKLLHK TLFMAVLLLL 120
  121 LISVPISFLW LNVHKILTGF GQREDISFIA KKYLLYLLPE LPILSFLCPL KAYLSSQGVT 180
  181 LPIMFTTAAA TSLHIPINIV LSKARGIEGV AMAVWITDFI VVILLTGYVI VVERMKENKW 240
  241 KQGGWLNQSA QDWLTLIKLS GPCCLTVCLE WWCYEILVLL TGRLPNPVQA VSILIIVFNF 300
  301 DYLLYAVMLS LGTCVATRVS NELGANNPKG AYRAAYTTLI VGIISGCIGA LVMIAFRGFW 360
  361 GSLYTHHDQL ILNGVKKMML IMAVIEVVNF PLMVCGEIVR GTAKPSLGMY ANLSGFYLLA 420
  421 LPLGATLAFK AKQGLQGFLI GLFVGISLCL SILLIFIARI DWEKEAGKAQ ILTCNTEDEQ 480
  481 TSQGSGQDSH S