YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|25406541, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	71	0.81
Transmembrane Helix	72	93	0.90
Non-Cytoplasmic	94	101	0.61
Transmembrane Helix	102	120	0.89
Cytoplasmic	121	133	0.84
Transmembrane Helix	134	158	0.86
Non-Cytoplasmic	159	165	0.77
Transmembrane Helix	166	186	0.93
Cytoplasmic	187	229	0.92
Transmembrane Helix	230	251	0.84
Non-Cytoplasmic	252	261	0.77
Transmembrane Helix	262	281	0.93
Cytoplasmic	282	296	0.83
Transmembrane Helix	297	318	0.94
Non-Cytoplasmic	319	324	0.86
Transmembrane Helix	325	345	0.92
Cytoplasmic	346	369	0.86
Transmembrane Helix	370	390	0.66
Non-Cytoplasmic	391	417	0.72
Transmembrane Helix	418	438	0.86
Cytoplasmic	439	490	0.77

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKAETMTLLL VNLAGIMERA DESLLPGVYK EVGLALHTDP TGLGSLTLLR SMVQAACYPL  60
   61 AAYMAIRHNR AHVIALGAFL WSAATFLVAF SSTFFQVAVS RALNGIGLAL VAPAIQSLVA 120
  121 DSTDDANRGT AFGWLQLTAN IGSILGGLCS VLIAPLTFMG IPGWRVAFHI VGVISVIVGV 180
  181 LVRVFANDPH FVKDGVDVSN QPGSRKPFCT EVKDLVREAD TVIKIRSFQI IVAQGVTGSF 240
  241 PWSALSFAPM WLELIGFSHG KTAFLMGLFV AASSLGGLFG GKMGDFLSTR LPNSGRIILA 300
  301 QISSASAIPL AAILLLVLPD DPSTAAIHGL ILVLLGLFVS WNAPATNNPI FAEIVPEKSR 360
  361 TSVYALDKSF ESILSSFAPP IVGILAQHVY GYKPIPEGSS RSTEIATDRE NAASLAKALY 420
  421 TSIGLPMAAC CFIYSFLYRS YPLDRDRARM EAFIDSEMRE LLPESSNRDI EFSQEEDPFA 480
  481 NHVNPNLQAR