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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: Y5410_ARATH
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.83
Topology Confidence: 0.80
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRGRSFIFY FVLFLFFGSS ALYSQVTGDL AGDRQALLDF LNNIIHPRSL AWNTSSPVCT  60
   61 TWPGVTCDID GTRVTALHLP GASLLGVIPP GTISRLSELQ ILSLRSNGLR GPFPIDFLQL 120
  121 KKLKAISLGN NRFSGPLPSD YATWTNLTVL DLYSNRFNGS IPAGFANLTG LVSLNLAKNS 180
  181 FSGEIPDLNL PGLRRLNFSN NNLTGSIPNS LKRFGNSAFS GNNLVFENAP PPAVVSFKEQ 240
  241 KKNGIYISEP AILGIAISVC FVIFFVIAVV IIVCYVKRQR KSETEPKPDK LKLAKKMPSE 300
  301 KEVSKLGKEK NIEDMEDKSE INKVMFFEGS NLAFNLEDLL IASAEFLGKG VFGMTYKAVL 360
  361 EDSKVIAVKR LKDIVVSRKD FKHQMEIVGN IKHENVAPLR AYVCSKEEKL MVYDYDSNGS 420
  421 LSLRLHGKNA DEGHVPLNWE TRLRFMIGVA KGLGHIHTQN LAHGNIKSSN VFMNSEGYGC 480
  481 ISEAGLPLLT NPVVRADSSA RSVLRYRAPE VTDTRRSTPE SDIYSFGILM LETLTGRSIM 540
  541 DDRKEGIDLV VWVNDVISKQ WTGEVFDLEL VKTPNVEAKL LQMLQLGTSC TAMVPAKRPD 600
  601 MVKVVETLEE IERD

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle