YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	P4H1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.78
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPAMKIVFG LLTFVTVGMV IGSLLQLAFI NRLEDSYGTG FPSLRGLRGQ NTRYLRDVSR  60
   61 WANDKDAELL RIGNVKPEVV SWSPRIIVLH DFLSPEECEY LKAIARPRLQ VSTVVDVKTG 120
  121 KGVKSDVRTS SGMFLTHVER SYPIIQAIEK RIAVFSQVPA ENGELIQVLR YEPQQFYKPH 180
  181 HDYFADTFNL KRGGQRVATM LMYLTDDVEG GETYFPLAGD GDCTCGGKIM KGISVKPTKG 240
  241 DAVLFWSMGL DGQSDPRSIH GGCEVLSGEK WSATKWMRQK ATS

Type	Start	End	Confidence
Cytoplasmic	1	6	0.72
Transmembrane Helix	7	29	0.72
Non-Cytoplasmic	30	283	0.95