YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GONS5_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	15	0.82
Transmembrane Helix	16	37	0.84
Non-Cytoplasmic	38	43	0.86
Transmembrane Helix	44	64	0.92
Cytoplasmic	65	83	0.85
Transmembrane Helix	84	105	0.89
Non-Cytoplasmic	106	111	0.68
Transmembrane Helix	112	129	0.64
Cytoplasmic	130	134	0.63
Transmembrane Helix	135	154	0.85
Non-Cytoplasmic	155	159	0.46
Transmembrane Helix	160	180	0.81
Cytoplasmic	181	192	0.56
Transmembrane Helix	193	213	0.91
Non-Cytoplasmic	214	228	0.60
Transmembrane Helix	229	252	0.88
Cytoplasmic	253	257	0.56
Transmembrane Helix	258	280	0.77
Non-Cytoplasmic	281	285	0.57
Transmembrane Helix	286	305	0.90
Cytoplasmic	306	341	0.69

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEGSLWRQW TMFRSLLSIL QWWGFNVTVI IMNKWIFQKL DFKFPLSVSC VHFICSSIGA  60
   61 YIVIKVLKLK PLIVVDPEDR WRRIFPMSFV FCINIVLGNI SLRYIPVSFM QTIKSLTPAT 120
  121 TVVLQWLVWR KYFDWRIWAS LVPIVGGILL TSITELSFNV FGFCAALFGC LATSTKTILA 180
  181 ESLLHGYKFD SINTVYYMAP FATMILGLPA FLLERNGILD WFEAHPSPWS ALIILFNSGV 240
  241 LAFCLNFSIF YVIQSTTAVT FNVAGNLKVA VAVFVSWMIF RNPISPMNAV GCGITLVGCT 300
  301 FYGYVRHMLS QQQPGTPRTP RTPRNKMELI PLVNDKLESK I