YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YSL7_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	43	0.99
Transmembrane Helix	44	64	0.92
Non-Cytoplasmic	65	70	0.79
Transmembrane Helix	71	91	0.93
Cytoplasmic	92	110	0.94
Transmembrane Helix	111	134	0.89
Non-Cytoplasmic	135	156	0.96
Transmembrane Helix	157	179	0.90
Cytoplasmic	180	218	0.95
Transmembrane Helix	219	238	0.87
Non-Cytoplasmic	239	273	0.80
Transmembrane Helix	274	298	0.85
Cytoplasmic	299	319	0.83
Transmembrane Helix	320	339	0.68
Non-Cytoplasmic	340	390	0.65
Transmembrane Helix	391	412	0.91
Cytoplasmic	413	419	0.55
Transmembrane Helix	420	440	0.93
Non-Cytoplasmic	441	456	0.56
Transmembrane Helix	457	484	0.78
Cytoplasmic	485	504	0.70
Transmembrane Helix	505	528	0.92
Non-Cytoplasmic	529	561	0.61
Transmembrane Helix	562	584	0.85
Cytoplasmic	585	602	0.44
Transmembrane Helix	603	626	0.85
Non-Cytoplasmic	627	639	0.50
Transmembrane Helix	640	664	0.64
Cytoplasmic	665	688	0.59

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEVERSKKDD DLNNGSKSNE EEEISVERIF EESNEIPPPW QKQLTFRALI VSFILAILFT  60
   61 FVVMKLNLTT GIIPSLNISA GLLGFFFVKS WTKILNKAGF LKQPFTRQEN TVIQTCVVAS 120
  121 SGIAFSGGFG SYLFGMSDVV AKQSAEANTP LNIKNPHLGW MIGFLFVVSF LGLFSVVPLR 180
  181 KIMIVDFKLT YPSGTATAHL INSFHTPQGA KLAKKQVRAL GKFFSFSFLW GFFQWFFATG 240
  241 DGCGFANFPT FGLKAYENKF YFDFSATYVG VGMICPYLIN VSLLIGAILS WGVMWPLIGA 300
  301 QKGKWYAADL SSTSLHGLQG YRVFIAIAMI LGDGLYNFIK VLGRTVFGLY KQFKNKDVLP 360
  361 INDHTSTAPV TISYDDKRRT ELFLKDRIPS WFAVTGYVVL AIVSIITVPH IFHQLKWYHI 420
  421 LIMYIIAPVL AFCNAYGCGL TDWSLASTYG KLAIFTIGAW AGASNGGVLA GLAACGVMMN 480
  481 IVSTASDLMQ DFKTGYMTLA SPRSMFLSQA IGTAMGCVIS PCVFWLFYKA FPDFGQPGTA 540
  541 YPAPYALVYR NMSILGVEGF SALPKHCLML CYIFFAAAVI VNGIRDALGP KWARFIPLPM 600
  601 AMAIPFYLGG YFTIDMCLGS LILFIWRKLN KPKADAYSSA VASGLICGEG IWTLPSSILA 660
  661 LAGVKAPICM KFLSMASNNK VDAFLNPS